Report for Sequence Feature Glyma20g38560
Feature Type: gene_model
Chromosome: Gm20
Start: 46127061
stop: 46129533
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g38560
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G55120 AT
Annotation by Michelle Graham. TAIR10: Chalcone-flavanone isomerase family protein | chr3:20430248-20431415 REVERSE LENGTH=246
SoyBase E_val: 4.00E-71 ISS
GO:0009411 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV
SoyBase N/A ISS
GO:0009718 GO-bp
Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process
SoyBase N/A ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0009744 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus
SoyBase N/A ISS
GO:0009813 GO-bp
Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process
SoyBase N/A ISS
GO:0010224 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV-B
SoyBase N/A ISS
GO:0042398 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process
SoyBase N/A ISS
GO:0080167 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to karrikin
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009705 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane
SoyBase N/A ISS
GO:0042406 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to endoplasmic reticulum membrane
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0016872 GO-mf
Annotation by Michelle Graham. GO Molecular Function: intramolecular lyase activity
SoyBase N/A ISS
GO:0045430 GO-mf
Annotation by Michelle Graham. GO Molecular Function: chalcone isomerase activity
SoyBase N/A ISS
PF02431 PFAM
Chalcone-flavanone isomerase
JGI ISS
UniRef100_Q93XE6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Chalcone--flavonone isomerase 1A n=1 Tax=Glycine max RepID=CFI1A_SOYBN
SoyBase E_val: 2.00E-154 ISS
UniRef100_Q93XE6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Chalcone--flavonone isomerase 1A n=1 Tax=Glycine max RepID=CFI1A_SOYBN
SoyBase E_val: 2.00E-154 ISS
Expression Patterns of Glyma20g38560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma20g38560 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g241500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g38560
Transcripts of Glyma20g38560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g38560.2 sequence type=transcript gene model=Glyma20g38560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATCTTAAGTGAAGAGGATCTGTGCTCTCTAGATACATGCTATATGTATAGAAGATGTATGAAGTGTCTATATAAGTGATTGTGGTCTCATTCATTTGCAACAACACAAGCTGGGGTGTTAAATAGAAAAGAGGAGTTTGAGAATGGCAACGATCAGCGCGGTTCAGGTGGAGTTCCTGGAGTTTCCAGCGGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAGGAGTATACTTGGAGGATAAGGCGGTGCCATCACTCGCCGCTAAGTGGAAGGGTAAAACTTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCGCTGAATACTCAAAGAAGGTGATGGAAAACTGCGTGGCACACATGAAGTCTGTTGGGACTTACGGTGATGCTGAAGCCGCAGCCATTGAAAAGTTTGCTGAAGCCTTCAAGAATGTGAATTTTGCACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGGTCAGTTGCTTGTTTTAGTTAATGAAATTAATATGTTTGCCTTGTCCTGTTCCACTAATATAAATTAATGTGCGTGCGTGTGTGTCTTACAGCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATAGAGAACAAGGCTGTATCAGCGGCGGTCTTGGAGACCATGATTGGTGAACATGCTGTTTCCCCTGACTTAAAACGCAGTTTGGCTTCTCGATTGCCTGCGGTATTGAGCCACGGCATTATAGTCTGAGAAATGAGAAGGATCAACTTTACCTTTTTCAAATATTCTTGTTTTTCTCCTTTCTTTCTTGTCGCTTGTCATGTATTTCTACTGTTTTATTAAATAATAAAATTGAGTTCTGTTAGAGTTGGTGAAACGAACATAATTTTTTCTTCTAAATTGATGAATGAGAATAAAATTTAAATTAGTATTCAAAAAATATATATATAAGGTATTTTATAATTTTTGAATGTAAAGTTGTAATTGAAGTCATAAATTTGTTTAGACTTTGTATTCAAAAGTCCTAGAGTATCTGATATTTTTTTGGTACCAATCTAAATTTTATCT
Coding sequences of Glyma20g38560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g38560.1 sequence type=CDS gene model=Glyma20g38560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAACGATCAGCGCGGTTCAGGTGGAGTTCCTGGAGTTTCCAGCGGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAGGAGTATACTTGGAGGATAAGGCGGTGCCATCACTCGCCGCTAAGTGGAAGGGTAAAACTTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCGCTGAATACTCAAAGAAGGTGATGGAAAACTGCGTGGCACACATGAAGTCTGTTGGGACTTACGGTGATGCTGAAGCCGCAGCCATTGAAAAGTTTGCTGAAGCCTTCAAGAATGTGAATTTTGCACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATAGAGAACAAGGCTGTATCAGCGGCGGTCTTGGAGACCATGATTGGTGAACATGCTGTTTCCCCTGACTTAAAACGCAGTTTGGCTTCTCGATTGCCTGCGGTATTGAGCCACGGCATTATAGTCTGA
>Glyma20g38560.2 sequence type=CDS gene model=Glyma20g38560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAACGATCAGCGCGGTTCAGGTGGAGTTCCTGGAGTTTCCAGCGGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAGGAGTATACTTGGAGGATAAGGCGGTGCCATCACTCGCCGCTAAGTGGAAGGGTAAAACTTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCGCTGAATACTCAAAGAAGGTGATGGAAAACTGCGTGGCACACATGAAGTCTGTTGGGACTTACGGTGATGCTGAAGCCGCAGCCATTGAAAAGTTTGCTGAAGCCTTCAAGAATGTGAATTTTGCACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGGTCAGTTGCTTGTTTTAG
Predicted protein sequences of Glyma20g38560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g38560.1 sequence type=predicted peptide gene model=Glyma20g38560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATISAVQVEFLEFPAVVTSPASGKTYFLGGAGERGLTIEGKFIKFTGIGVYLEDKAVPSLAAKWKGKTSEELVHTLHFYRDIISGPFEKLIRGSKILPLAGAEYSKKVMENCVAHMKSVGTYGDAEAAAIEKFAEAFKNVNFAPGASVFYRQSPDGILGLSFSEDATIPEKEAAVIENKAVSAAVLETMIGEHAVSPDLKRSLASRLPAVLSHGIIV*
>Glyma20g38560.2 sequence type=predicted peptide gene model=Glyma20g38560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATISAVQVEFLEFPAVVTSPASGKTYFLGGAGERGLTIEGKFIKFTGIGVYLEDKAVPSLAAKWKGKTSEELVHTLHFYRDIISGPFEKLIRGSKILPLAGAEYSKKVMENCVAHMKSVGTYGDAEAAAIEKFAEAFKNVNFAPGASVFYRQSPDGILGVSCLF*